Likelihood function and random number generator for a generalization of the
2DSD Model presented by Pleskac & Busemeyer (2010). It includes following
parameters:
DDM parameters: a
(threshold separation), z
(starting point; relative), v
(drift rate), t0
(non-decision time/
response time constant), d
(differences in speed of response execution),
sv
(inter-trial-variability of drift), st0
(inter-trial-variability
of non-decisional components), sz
(inter-trial-variability of relative
starting point), s
(diffusion constant).
Usage
d2DSD(rt, response = "upper", th1, th2, a, v, t0 = 0, z = 0.5, d = 0,
sz = 0, sv = 0, st0 = 0, tau = 1, lambda = 0, s = 1,
simult_conf = FALSE, precision = 6, z_absolute = FALSE,
stop_on_error = TRUE, stop_on_zero = FALSE)
r2DSD(n, a, v, t0 = 0, z = 0.5, d = 0, sz = 0, sv = 0, st0 = 0,
tau = 1, lambda = 0, s = 1, delta = 0.01, maxrt = 15,
simult_conf = FALSE, z_absolute = FALSE, stop_on_error = TRUE)
Arguments
- rt
a vector of RTs. Or for convenience also a
data.frame
with columnsrt
andresponse
.- response
character vector, indicating the decision, i.e. which boundary was met first. Possible values are
c("upper", "lower")
(possibly abbreviated) and"upper"
being the default. Alternatively, a numeric vector with values 1=lower and 2=upper or -1=lower and 1=upper, respectively. For convenience,response
is converted viaas.numeric
also allowing factors. Ignored if the first argument is adata.frame
.- th1
together with
th2
: scalars or numerical vectors giving the lower and upper bound of the interval, in which the accumulator should end at the time of the confidence judgment (i.e. at timert
+tau
). Only values withth2
>=th1
are accepted.- th2
(see
th1
)- a
threshold separation. Amount of information that is considered for a decision. Large values indicate a conservative decisional style. Typical range: 0.5 <
a
< 2- v
drift rate. Average slope of the information accumulation process. The drift gives information about the speed and direction of the accumulation of information. Large (absolute) values of drift indicate a good performance. If received information supports the response linked to the upper threshold the sign will be positive and vice versa. Typical range: -5 <
v
< 5- t0
non-decision time or response time constant (in seconds). Lower bound for the duration of all non-decisional processes (encoding and response execution). Typical range: 0.1 <
t0
< 0.5. Default is 0.- z
(by default relative) starting point. Indicator of an a priori bias in decision making. When the relative starting point
z
deviates from0.5
, the amount of information necessary for a decision differs between response alternatives. Default is0.5
(i.e., no bias).- d
differences in speed of response execution (in seconds). Positive values indicate that response execution is faster for responses linked to the upper threshold than for responses linked to the lower threshold. Typical range: -0.1 <
d
< 0.1. Default is 0.- sz
inter-trial-variability of starting point. Range of a uniform distribution with mean
z
describing the distribution of actual starting points from specific trials. Values different from 0 can predict fast errors (but can slow computation considerably). Typical range: 0 <sz
< 0.2. Default is 0. (Given in relative range i.e. bounded by 2*min(z, 1-z))- sv
inter-trial-variability of drift rate. Standard deviation of a normal distribution with mean
v
describing the distribution of actual drift rates from specific trials. Values different from 0 can predict slow errors. Typical range: 0 <sv
< 2. Default is 0.- st0
inter-trial-variability of non-decisional components. Range of a uniform distribution with mean
t0 + st0/2
describing the distribution of actualt0
values across trials. Accounts for response times belowt0
. Reduces skew of predicted RT distributions. Values different from 0 can slow computation considerably. Typical range: 0 <st0
< 0.2. Default is 0.- tau
post-decisional accumulation time. The length of the time period after the decision was made until the confidence judgment is made. Range:
tau
>0. Default:tau
=1.- lambda
power for judgment time in the division of the confidence measure by the judgment time (Default: 0, i.e. no division which is the version of 2DSD proposed by Pleskac and Busemeyer)
- s
diffusion constant. Standard deviation of the random noise of the diffusion process (i.e., within-trial variability), scales
a
,v
,sv
, andth
's. Needs to be fixed to a constant in most applications. Default is 1. Note that the default used by Ratcliff and in other applications is often 0.1.- simult_conf
logical. Whether in the experiment confidence was reported simultaneously with the decision, as then decision and confidence judgment are assumed to have happened subsequent before response and computations are different, when there is an observable interjudgment time (then
simult_conf
should beFALSE
).- precision
numerical
scalar value. Precision of calculation. Determines the the stepsize of integration w.r.t.z
andt0
. Represents the number of decimals precisely computet on average. Default is 6.- z_absolute
logical. Determines whether
z
is treated as absolute start point (TRUE
) or relative (FALSE
; default) toa
.- stop_on_error
Should the diffusion functions return 0 if the parameters values are outside the allowed range (=
FALSE
) or produce an error in this case (=TRUE
).- stop_on_zero
Should the computation of densities stop as soon as a density value of 0 occurs. This may save a lot of time if the function is used for a likelihood function. Default: FALSE
- n
integer. The number of samples generated.
- delta
numeric. Discretization step size for simulations in the stochastic process
- maxrt
numeric. Maximum decision time returned. If the simulation of the stochastic process exceeds a decision time of
maxrt
, theresponse
will be set to 0 and themaxrt
will be returned asrt
.
Value
d2DSD
gives the density/likelihood/probability of the diffusion process
producing a decision of response
at time rt
and a confidence
judgment corresponding to the interval [ th1
, th2
].
The value will be a numeric vector of the same length as rt
.
r2DSD
returns a data.frame
with three columns and n
rows. Column names are rt
(response
time), response
(-1 (lower) or 1 (upper), indicating which bound was hit), and conf
(the
value of the confidence measure; not discretized!).
The distribution parameters (as well as response
, tau
, th1
and th2
) are recycled to the length of the result. In other words, the functions
are completely vectorized for all parameters and even the response boundary.
Details
For confidence: tau
(post-decisional accumulation time), lambda
the exponent of judgment time for the division by judgment time in the confidence measure,
th1
and th2
(lower and upper thresholds for confidence interval).
Note that the parameterization or defaults of non-decision time variability
st0
and diffusion constant s
differ from what is often found in the
literature.
The drift diffusion model (DDM; Ratcliff and McKoon, 2008) is a mathematical model for two-choice discrimination tasks. It is based on the assumption that information is accumulated continuously until one of two decision thresholds is hit. For introduction see Ratcliff and McKoon (2008).
The 2DSD is an extension of the DDM to explain confidence judgments based
on the preceding decision. It assumes a post decisional period where the process
continues the accumulation of information. At the end of the period a confidence
judgment (i.e. a judgment of the probability that the decision was correct) is made
based on the state of the process. Here, we use a given interval, given by th1
and th2
, assuming that the data is given with discrete judgments and
pre-processed, s.t. these discrete ratings are translated to the respective intervals.
The 2DSD Model was proposed by Pleskac and Busemeyer (2010).
All functions are fully vectorized across all parameters
as well as the response to match the length or rt
(i.e., the output
is always of length equal to rt
).
This allows for trial wise parameters for each model parameter.
For convenience, the function allows that the first argument is a data.frame
containing the information of the first and second argument in two columns (i.e.,
rt
and response
). Other columns (as well as passing response
separately argument) will be ignored.
Note
The parameterization of the non-decisional components, t0
and st0
,
differs from the parameterization sometimes used in the literature.
In the present case t0
is the lower bound of the uniform distribution of length
st0
, but not its midpoint. The parameterization employed here is in line
with the functions in the rtdists
package.
The default diffusion constant s
is 1 and not 0.1 as in most applications of
Roger Ratcliff and others. Usually s
is not specified as the other parameters:
a
, v
, and sv
, may be scaled to produce the same distributions
(as is done in the code).
The function code is basically an extension of the ddiffusion
function from the
package rtdists
for the Ratcliff diffusion model.
References
Pleskac, T. J., & Busemeyer, J. R. (2010). Two-Stage Dynamic Signal Detection: A Theory of Choice, Decision Time, and Confidence, Psychological Review, 117(3), 864-901. doi:10.1037/a0019737
Ratcliff, R., & McKoon, G. (2008). The diffusion decision model: Theory and data for two-choice decision tasks. Neural Computation, 20(4), 873-922.
Author
For the original rtdists
package: Underlying C code by Jochen Voss and Andreas Voss. Porting and R wrapping by Matthew Gretton, Andrew Heathcote, Scott Brown, and Henrik Singmann. qdiffusion
by Henrik Singmann. For the d2DSD
function the C code was extended by Sebastian Hellmann.
Examples
# Plot rt distribution ignoring confidence
curve(d2DSD(x, "upper", -Inf, Inf, tau=1, a=2, v=0.4, sz=0.2, sv=0.9), xlim=c(0, 2), lty=2)
curve(d2DSD(x, "lower", -Inf, Inf, tau=1, a=2, v=0.4, sz=0.2, sv=0.9), col="red", lty=2, add=TRUE)
curve(d2DSD(x, "upper", -Inf, Inf, tau=1, a=2, v=0.4),add=TRUE)
curve(d2DSD(x, "lower", -Inf, Inf, tau=1, a=2, v=0.4), col="red", add=TRUE)
# Generate a random sample
dfu <- r2DSD(5000, a=2,v=0.5,t0=0,z=0.5,d=0,sz=0,sv=0, st0=0, tau=1, s=1)
# Same RT distribution but upper and lower responses changed
dfl <- r2DSD(50, a=2,v=-0.5,t0=0,z=0.5,d=0,sz=0,sv=0, st0=0, tau=1, s=1)
head(dfu)
#> rt response conf
#> 1 1.42 1 0.2387984
#> 2 0.81 1 0.9773506
#> 3 0.76 1 1.1594624
#> 4 1.03 1 2.2139801
#> 5 2.53 1 1.6380412
#> 6 0.21 -1 -0.5891229
d2DSD(dfu, th1=-Inf, th2=Inf, a=2, v=.5)[1:5]
#> [1] 0.18807364 0.43036375 0.46031878 0.31945417 0.04162406
# Scaling diffusion parameters leads do same density values
s <- 2
d2DSD(dfu, th1=-Inf, th2=Inf, a=2*s, v=.5*s, s=2)[1:5]
#> [1] 0.18807364 0.43036375 0.46031878 0.31945417 0.04162406
if (requireNamespace("ggplot2", quietly = TRUE)) {
require(ggplot2)
ggplot(dfu, aes(x=rt, y=conf))+
stat_density_2d(aes(fill = after_stat(density)), geom = "raster", contour = FALSE) +
facet_wrap(~response)
}
boxplot(conf~response, data=dfu)
# Restricting to specific confidence region
dfu <- dfu[dfu$conf >0 & dfu$conf <1,]
d2DSD(dfu, th1=0, th2=1, a=2, v=0.5)[1:5]
#> [1] 0.04546310 0.10403197 0.17687802 0.04932451 0.04948609
# If lower confidence threshold is higher than the upper, the function throws an error,
# except when stop_on_error is FALSE
d2DSD(dfu[1:5,], th1=1, th2=0, a=2, v=0.5, stop_on_error = FALSE)
#> error: invalid parameter combination th1 = 1, th2 = 0
#> error: invalid parameter combination th1 = 1, th2 = 0
#> [1] 0 0 0 0 0